miRBase entry: lgi-mir-1

Stem-loop lgi-mir-1

Accession

MI0010100

Description

Lottia gigantea lgi-mir-1 precursor miRNA

Sequence

guaucuguaugcagacaacauacuuccuugcuaucccauauuuuauauaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuguguaugguuuu
....(((((((((((..(((((((((.((((.((.(((((.............))))).)))))).)))))))))..)))))))))))....

Structure

guau           ca         c    u  c     uuuua 
    cuguaugcaga  acauacuuc uugc au ccaua     u
    |||||||||||  ||||||||| |||| || |||||     a
    gguauguguuu  UGUAUGAAG AAUG UA GGUau     u
uuuu           UA         A    -  A     cguaa

Annotation confidence Not enough data

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Genome context

KB199650.1: 5198452-5198543 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lgi-mir-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature lgi-miR-1

Accession	MIMAT0009557
Description	Lottia gigantea lgi-miR-1 mature miRNA
Sequence	56 - UGGAAUGUAAAGAAGUAUGUAU - 77
Evidence	not_experimental

References

PubMed ID: 19196333
The deep evolution of metazoan microRNAs
"Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
"Evol Dev (2009) 11:50-68