miRBase entry: lgi-mir-100

Stem-loop lgi-mir-100


Accession
MI0010119
Description
Lottia gigantea lgi-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

auuagugacuaguuaauauaAACCCGUAGAUCCGAACUUGUGauaaaaucugacgcaagcuuguuucuagggguccuauauuggcuaggguaucuacagau
..(((...((((((((((((.((((.((((..(((.((((((...........)))))).)))..)))).))))..)))))))))))).....))).....

Structure
---au   --uga            -A    G    UC   A      auaa 
     uag     cuaguuaauaua  ACCC UAGA  CGA CUUGUG    a
     |||     ||||||||||||  |||| ||||  ||| ||||||    a
     auc     gaucgguuauau  uggg aucu  guu gaacgc    u
uagac   uaugg            cc    g    uu   c      aguc 


Annotation confidence Not enough data
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Genome context
KB200869.1: 2793558-2793658 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lgi-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lgi-miR-100

Accession MIMAT0009577
Description Lottia gigantea lgi-miR-100 mature miRNA
Sequence 21 - AACCCGUAGAUCCGAACUUGUG - 42
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68