Stem-loop nve-mir-100

Accession

MI0010144

Description

Nematostella vectensis nve-mir-100 precursor miRNA

Sequence

63298 reads, 45475 reads per million, 24 experiments

uaaucgcacaguaucGACCCGUAGAUCCGAACUUGUGgaguuucaccACAGGCUCGUUUCUACGGAUCAaaacugcgucgaaau
...((((.((((...((.(((((((..(((.(((((((.......))))))).)))..))))))).))...)))).).)))...

Structure

uaa   - a    auc  C       UC   A       ag 
   ucg c cagu   GA CCGUAGA  CGA CUUGUGg  u
   ||| | ||||   || |||||||  ||| |||||||  u
   agc g guca   CU GGCAUCU  GCU GGACAcc  u
uaa   u c    aaA  A       UU   C       ac 

Annotation confidence High

Genome context

scaffold_82: 122012-122095 [+]

Mature nve-miR-100-5p

• Accession: MIMAT0009605
• Description: Nematostella vectensis nve-miR-100-5p mature miRNA
• Sequence: 16 - GACCCGUAGAUCCGAACUUGUG - 37
• Evidence: experimental ; 454 [1-2], Illumina [3]

Mature nve-miR-100-3p

• Accession: MIMAT0009606
• Description: Nematostella vectensis nve-miR-100-3p mature miRNA
• Sequence: 48 - ACAGGCUCGUUUCUACGGAUCA - 69
• Evidence: experimental ; 454 [2], Illumina [3]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


3. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663