miRBase entry: spu-mir-252b

Stem-loop spu-mir-252b


Accession
MI0010209
Description
Strongylocentrotus purpuratus spu-mir-252b precursor miRNA


Sequence

cuugaguccacguugccgauCUAAGUAGUAGUGCCGCAGGUAcugauuuuuaagugauaccuguacacggcuacuuacauuggcaacgagcuggaaaauca
..(((.((((((((((((((.((((((((.(((..(((((((((........)))...)))))).))).)))))))).))))))))))...))))...)))

Structure
cu   --g    ---          C        A   CC      ---   gau 
  uga   ucca   cguugccgau UAAGUAGU GUG  GCAGGU   Acu   u
  |||   ||||   |||||||||| |||||||| |||  ||||||   |||    
  acu   aggu   gcaacgguua auucaucg cac  ugucca   uga   u
--   aaa    cga          c        g   -a      uag   auu 


Annotation confidence Not enough data
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Genome context
KN912884.1: 119142-119242 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from spu-mir-252b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-252b

Accession MIMAT0009673
Description Strongylocentrotus purpuratus spu-miR-252b mature miRNA
Sequence 21 - CUAAGUAGUAGUGCCGCAGGUA - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68