Stem-loop aqu-mir-2014

Accession

MI0010222

Description

Amphimedon queenslandica aqu-mir-2014 precursor miRNA

Sequence

24575 reads, 161802 reads per million, 9 experiments

ugugguauugUAGGUCGGGCCUGGGGGGCAGGuggaaggaauggcggccaaaagcggcaagggagagugauggcugcacugcacuaguucucuuuugcugcugcgggcugccaaccuccUGCCAAACAAGUCCGAUCUACAagaccacgg
((((((.(((((((((((((.((...((((((....(((..((((((((...(((((((((((((((...(((.(((...)))))).)))))))))))))))...)))))))).)))))))))...)).))))))))))))).)))))).

Structure

-      a             C  GGG      ugga   aa        aaa               uga   c   a 
 uguggu uugUAGGUCGGGC UG   GGCAGG    agg  uggcggcc   agcggcaagggagag   ugg ugc  
 |||||| ||||||||||||| ||   ||||||    |||  ||||||||   |||||||||||||||   ||| ||| c
 gcacca aACAUCUAGCCUG AC   CCGUcc    ucc  accgucgg   ucgucguuuucucuu   auc acg  
g      g             A  AAA      ----   -a        gcg               --g   -   u 

Annotation confidence High

Genome context

Unknown

Mature aqu-miR-2014-5p

• Accession: MIMAT0009686
• Description: Amphimedon queenslandica aqu-miR-2014-5p mature miRNA
• Sequence: 11 - UAGGUCGGGCCUGGGGGGCAGG - 32
• Evidence: experimental ; 454 [2]

Mature aqu-miR-2014-3p

• Accession: MIMAT0009687
• Description: Amphimedon queenslandica aqu-miR-2014-3p mature miRNA
• Sequence: 120 - UGCCAAACAAGUCCGAUCUACA - 141
• Evidence: experimental ; 454 [1-2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197