Stem-loop aqu-mir-2019

Accession

MI0010227

Description

Amphimedon queenslandica aqu-mir-2019 precursor miRNA

Sequence

16140 reads, 155770 reads per million, 9 experiments

cgauucAAAGUGAUCGGGUUGCCGUCUGagcucuagcuagccauacccaggccuuguuaacuuaaccaguccuagagaaggcucuggcucaCACGGUAGCUUGCUCACUUAGAa
...(((.((((((.(((((((((((.((((((..((..((((.(..(.(((.((.((((...)))).)).))).)..).)))))))))))).))))))))))).)))))).)))

Structure

cga   A      U           C      cu  cu    a ac c   c  u    a 
   uuc AAGUGA CGGGUUGCCGU UGagcu  ag  agcc u  c agg cu guua  
   ||| |||||| ||||||||||| ||||||  ||  |||| |  | ||| || |||| c
   aAG UUCACU GUUCGAUGGCA acucgg  uc  ucgg a  g ucc ga caau  
---   A      C           C      --  --    a ga a   u  c    u 

Annotation confidence High

Genome context

Unknown

Mature aqu-miR-2019-5p

• Accession: MIMAT0009696
• Description: Amphimedon queenslandica aqu-miR-2019-5p mature miRNA
• Sequence: 7 - AAAGUGAUCGGGUUGCCGUCUG - 28
• Evidence: experimental ; 454 [1-2]

Mature aqu-miR-2019-3p

• Accession: MIMAT0009697
• Description: Amphimedon queenslandica aqu-miR-2019-3p mature miRNA
• Sequence: 92 - CACGGUAGCUUGCUCACUUAGA - 113
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197