Stem-loop nve-mir-2022

Accession

MI0010263

Description

Nematostella vectensis nve-mir-2022 precursor miRNA

Sequence

12980 reads, 11553 reads per million, 24 experiments

agaucgccugaaagucGGGAUAAAUCAACUGUCAAGUGguugucaUUUGCUAGUUGCUUUUGUCCCGCcuuuucu
.........(((((.(((((((((.((((((.((((((.....)))))).))))))..))))))))).)))))..

Structure

agaucgccu     u         -U      U      g 
         gaaag cGGGAUAAA  CAACUG CAAGUG u
         ||||| |||||||||  |||||| |||||| u
         uuuuc GCCCUGUUU  GUUGAU GUUUac g
-------uc     C         UC      C      u 

Annotation confidence Medium

Genome context

scaffold_148: 501359-501433 [+]

Mature nve-miR-2022-3p

• Accession: MIMAT0009734
• Description: Nematostella vectensis nve-miR-2022-3p mature miRNA
• Sequence: 46 - UUUGCUAGUUGCUUUUGUCCCGC - 68
• Evidence: experimental ; 454 [1-2]

Mature nve-miR-2022-5p

• Accession: MIMAT0032100
• Description: Nematostella vectensis nve-miR-2022-5p mature miRNA
• Sequence: 17 - GGGAUAAAUCAACUGUCAAGUG - 38
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


3. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663