Stem-loop sko-mir-2008

Accession

MI0010267

Description

Saccoglossus kowalevskii sko-mir-2008 precursor miRNA mir-2008

Gene
family

RF03355; mir-2008

Sequence

uucuucaucuuuuacuccguauuaacacugagguugauguucgcaguaacuaaccAUCAGCCUCGCUGUCAAUACGGcguaacugaugguag
....(((((..((((.(((((((.(((.(((((((((((...............))))))))))).))).))))))).))))..)))))...

Structure

uucu     uu    u       a   c           uucgca 
    ucauc  uuac ccguauu aca ugagguugaug      g
    |||||  |||| ||||||| ||| |||||||||||      u
    gguag  aaug GGCAUAA UGU GCUCCGACUAc      a
-gau     uc    c       C   C           caauca 

Annotation confidence Low

Genome context

GL013559.1: 116427-116518 [-]

Mature sko-miR-2008

• Accession: MIMAT0009738
• Description: Saccoglossus kowalevskii sko-miR-2008 mature miRNA
• Sequence: 56 - AUCAGCCUCGCUGUCAAUACGG - 77
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68