miRBase entry: nve-mir-2024c

Stem-loop nve-mir-2024c


Accession
MI0010287
Description
Nematostella vectensis nve-mir-2024c precursor miRNA


Sequence

14264 reads, 36444 reads per million, 16 experiments
uucAGAAUAUUGGUGCUGGGCAAAAggucacauuUUGCACAACACCAAUAUUCUGAgg
(((((((((((((((.((.((((((.......)))))).)).))))))))))))))).

Structure
-               C  G      gg 
 uucAGAAUAUUGGUG UG GCAAAA  u
 ||||||||||||||| || ||||||  c
 gAGUCUUAUAACCAC AC CGUUuu  a
g               A  A      ac 


Annotation confidence High
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Genome context
scaffold_126: 91277-91334 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from nve-mir-2024c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nve-miR-2024c-5p

Accession MIMAT0009763
Description Nematostella vectensis nve-miR-2024c-5p mature miRNA
Sequence 4 - AGAAUAUUGGUGCUGGGCAAAA - 25
Evidence experimental
454 [1]

Mature nve-miR-2024c-3p

Accession MIMAT0009764
Description Nematostella vectensis nve-miR-2024c-3p mature miRNA
Sequence 35 - UUGCACAACACCAAUAUUCUGA - 56
Evidence experimental
454 [1]

References

  1. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197