Stem-loop nve-mir-2024d

Accession

MI0010288

Description

Nematostella vectensis nve-mir-2024d precursor miRNA

Sequence

42607 reads, 29493.0 reads per million, 23 experiments

caucagguagacuugcuucAGAAUAUUGGUGCUGGGCAAAAggucacauuUUGCACAAUUCCAAUAUUCUGAggcacuucugcugaa
..((((.((((..((((((((((((((((...((.((((((.......)))))).))...))))))))))))))))..)))))))).

Structure

ca    g    cu                UGC  G      gg 
  ucag uaga  ugcuucAGAAUAUUGG   UG GCAAAA  u
  |||| ||||  ||||||||||||||||   || ||||||  c
  aguc gucu  acggAGUCUUAUAACC   AC CGUUuu  a
-a    -    uc                UUA  A      ac 

Annotation confidence High

Genome context

scaffold_126: 87407-87493 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from nve-mir-2024d

Mature nve-miR-2024d-5p

• Accession: MIMAT0009765
• Description: Nematostella vectensis nve-miR-2024d-5p mature miRNA
• Sequence: 20 - AGAAUAUUGGUGCUGGGCAAAA - 41
• Evidence: experimental ; 454 [1]

Mature nve-miR-2024d-3p

• Accession: MIMAT0061357
• Description: Nematostella vectensis nve-miR-2024d-3p mature miRNA
• Sequence: 51 - UUGCACAAUUCCAAUAUUCUGA - 72
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197