Stem-loop nve-mir-2024e-1

Accession

MI0010289

Description

Nematostella vectensis nve-mir-2024e-1 precursor miRNA

Sequence

42901 reads, 25847 reads per million, 23 experiments

acaucagguagacuugcuucAGAGUAUUGGCGCUGGGCAAAAggucacauuUUGCACAUUACCAAUAUUCUGAggcacuucugcugaaggaacu
.(.((((.((((..((((((((((((((((...((.((((((.......)))))).))...))))))))))))))))..)))))))).).....

Structure

----a a    g    cu                CGC  G      gg 
     c ucag uaga  ugcuucAGAGUAUUGG   UG GCAAAA  u
     | |||| ||||  ||||||||||||||||   || ||||||  c
     g aguc gucu  acggAGUCUUAUAACC   AC CGUUuu  a
ucaag a    -    uc                AUU  A      ac 

Annotation confidence Medium

Genome context

scaffold_282: 93287-93380 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from nve-mir-2024e-1

Mature nve-miR-2024e-5p

• Accession: MIMAT0009766
• Description: Nematostella vectensis nve-miR-2024e-5p mature miRNA
• Sequence: 21 - AGAGUAUUGGCGCUGGGCAAAA - 42
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2024e-3p

• Accession: MIMAT0009767
• Description: Nematostella vectensis nve-miR-2024e-3p mature miRNA
• Sequence: 52 - UUGCACAUUACCAAUAUUCUGA - 73
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663