Stem-loop nve-mir-2028

Accession

MI0010294

Description

Nematostella vectensis nve-mir-2028 precursor miRNA

Sequence

15860 reads, 8125 reads per million, 23 experiments

aggacgauggagucuUAAUGUUCCUGCUUGUUCCUAuauauuaGGAACUAGCAGGAGCAUUAAGauuacagucgucaauaaac
..((((((..((((((((((((((((((.(((((((.....))))))).))))))))))))))))))...)))))).......

Structure

-----ag      -gg                  U       u 
       gacgau   agucuUAAUGUUCCUGCU GUUCCUA a
       ||||||   |||||||||||||||||| ||||||| u
       cugcug   uuaGAAUUACGAGGACGA CAAGGau a
caaauaa      aca                  U       u 

Annotation confidence Medium

Genome context

scaffold_6: 334197-334279 [-]

Mature nve-miR-2028-5p

• Accession: MIMAT0009776
• Description: Nematostella vectensis nve-miR-2028-5p mature miRNA
• Sequence: 16 - UAAUGUUCCUGCUUGUUCCUA - 36
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2028-3p

• Accession: MIMAT0009777
• Description: Nematostella vectensis nve-miR-2028-3p mature miRNA
• Sequence: 44 - GGAACUAGCAGGAGCAUUAAG - 64
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663