Stem-loop nve-mir-2029

Accession

MI0010295

Description

Nematostella vectensis nve-mir-2029 precursor miRNA

Sequence

20328 reads, 13567 reads per million, 24 experiments

cauaguguggcauuuaggugaUACGCAAUCCCUAGGUUACCAUgucagauGGUAAACUAUGGAUUGCGCUUCuccuaacuugccuaacugcaaugcu
..((((..((((.(((((.((..((((((((.(((..((((((.....))))))..))).))))))))..)).)))))..))))..)))).......

Structure

-----ca    gu    -u     u  UA        C   GU      g 
       uagu  ggca  uuagg ga  CGCAAUCC UAG  UACCAU u
       ||||  ||||  ||||| ||  |||||||| |||  |||||| c
       guca  ccgu  aaucc CU  GCGUUAGG AUC  AUGGua a
ucguaac    au    uc     u  UC        U   AA      g 

Annotation confidence Low

Genome context

scaffold_83: 157640-157736 [+]

Mature nve-miR-2029-5p

• Accession: MIMAT0009778
• Description: Nematostella vectensis nve-miR-2029-5p mature miRNA
• Sequence: 22 - UACGCAAUCCCUAGGUUACCAU - 43
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2029-3p

• Accession: MIMAT0009779
• Description: Nematostella vectensis nve-miR-2029-3p mature miRNA
• Sequence: 51 - GGUAAACUAUGGAUUGCGCUUC - 72
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663