Stem-loop nve-mir-2030

Accession

MI0010296

Description

Nematostella vectensis nve-mir-2030 precursor miRNA

Sequence

54384 reads, 39448 reads per million, 24 experiments

acacccacaguauggccguaUAGCAUAACAUUGUAAGAGAUUguaagaaCCUCUUUACAUUGUUGUGCUGUAcggauaugcugaauagu
.......(((((((.(((((((((((((((.((((((((.((.....)).))).))))).))))))))))))))).)))))))......

Structure

acaccca       g               U     -   A  g 
       caguaug ccguaUAGCAUAACA UGUAA GAG UU u
       ||||||| ||||||||||||||| ||||| ||| || a
       gucguau ggcAUGUCGUGUUGU ACAUU CUC aa a
-ugauaa       a               U     U   C  g 

Annotation confidence Medium

Genome context

scaffold_507: 85572-85660 [-]

Mature nve-miR-2030-5p

• Accession: MIMAT0009780
• Description: Nematostella vectensis nve-miR-2030-5p mature miRNA
• Sequence: 21 - UAGCAUAACAUUGUAAGAGAUU - 42
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2030-3p

• Accession: MIMAT0009781
• Description: Nematostella vectensis nve-miR-2030-3p mature miRNA
• Sequence: 50 - CCUCUUUACAUUGUUGUGCUGUA - 72
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663