Stem-loop nve-mir-2033

Accession

MI0010300

Description

Nematostella vectensis nve-mir-2033 precursor miRNA

Sequence

395 reads, 967.0 reads per million, 17 experiments

cgacauaucuuucugacucugAGCUAAUGAUGAGAGAAUCAAAcauugccugauaugcuaaauguagacaaucuuGAAUUCCUCGUUACUGAAGUUCaugagcucguguccuuucugccuu
.(((((........(((((((((((..(((((((.(((((((..((((.((.((((.....)))))).)))).))).)))))))))))....)))))).))).)))))))...........

Structure

----------c     aucuuucu  -   -      --AA       A    -   Ac    c  g    g 
           gacau        ga cuc ugAGCU    UGAUGAG GAAU CAA  auug cu auau c
           |||||        || ||| ||||||    ||||||| |||| |||  |||| || |||| u
           cugug        cu gag aCUUGA    AUUGCUC CUUA Guu  uaac ga ugua a
uuccgucuuuc     --------  c   u      AGUC       -    A   -c    a  -    a 

Annotation confidence Medium

Genome context

scaffold_127: 217397-217517 [+]

Mature nve-miR-2033-5p

• Accession: MIMAT0009788
• Description: Nematostella vectensis nve-miR-2033-5p mature miRNA
• Sequence: 22 - AGCUAAUGAUGAGAGAAUCAAA - 43
• Evidence: experimental ; 454 [1]

Mature nve-miR-2033-3p

• Accession: MIMAT0009789
• Description: Nematostella vectensis nve-miR-2033-3p mature miRNA
• Sequence: 76 - GAAUUCCUCGUUACUGAAGUUC - 97
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197