Stem-loop nve-mir-2034

Accession

MI0010301

Description

Nematostella vectensis nve-mir-2034 precursor miRNA

Sequence

450 reads, 423 reads per million, 15 experiments

gugaaaagaguguaguuuuaCUGAUGUUUUUAGAAUUAGCCCccuaaaugaaggGCUAAUGCAAAAAAUGUCAGUgcaaaugcaugaaacuuacaa
((((.....(((((....(((((((((((((.(.((((((((..........)))))))).).)))))))))))))....))))).....))))..

Structure

--    aaaga     guuu             A A        ccua 
  guga     gugua    uaCUGAUGUUUUU G AUUAGCCC    a
  ||||     |||||    ||||||||||||| | ||||||||     
  cauu     uacgu    gUGACUGUAAAAA C UAAUCGgg    a
aa    caaag     aaac             A G        aagu 

Annotation confidence Medium

Genome context

scaffold_4: 1299751-1299846 [-]

Mature nve-miR-2034-5p

• Accession: MIMAT0009790
• Description: Nematostella vectensis nve-miR-2034-5p mature miRNA
• Sequence: 21 - CUGAUGUUUUUAGAAUUAGCCC - 42
• Evidence: experimental ; 454 [1]

Mature nve-miR-2034-3p

• Accession: MIMAT0009791
• Description: Nematostella vectensis nve-miR-2034-3p mature miRNA
• Sequence: 55 - GCUAAUGCAAAAAAUGUCAGU - 75
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663