Stem-loop nve-mir-2038

Accession

MI0010305

Description

Nematostella vectensis nve-mir-2038 precursor miRNA

Sequence

522 reads, 386 reads per million, 19 experiments

aaccugaugagccuuagugucACCCUGAUGACCUUAGUGUCAcccugaugACCUUAAUGUCACCAUGAUGAccuuagugucacccugauga
.......(((..((.((.((((.(.((.((((.((((.((((......)))).)))).)))).)).).)))))).))..))).........

Structure

--aaccuga   gc  u  u    C C  A    C    U    cc 
         uga  cu ag gucA C UG UGAC UUAG GUCA  c
         |||  || || |||| | || |||| |||| ||||   
         acu  ga uc cAGU G AC ACUG AAUU CAgu  u
aguaguccc   gu  u  -    A U  C    U    C    ag 

Annotation confidence Medium

Genome context

scaffold_3: 358419-358509 [+]

Mature nve-miR-2038-5p

• Accession: MIMAT0009798
• Description: Nematostella vectensis nve-miR-2038-5p mature miRNA
• Sequence: 22 - ACCCUGAUGACCUUAGUGUCA - 42
• Evidence: experimental ; 454 [1]

Mature nve-miR-2038-3p

• Accession: MIMAT0009799
• Description: Nematostella vectensis nve-miR-2038-3p mature miRNA
• Sequence: 51 - ACCUUAAUGUCACCAUGAUGA - 71
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663