Stem-loop nve-mir-2040a-1

Accession

MI0010307

Description

Nematostella vectensis nve-mir-2040a-1 precursor miRNA

Sequence

282 reads, 266 reads per million, 19 experiments

gaucgugaugccuacaaccuUCGGGUCAGCUACGACAUGAGCGcuccucgUUUGUCUCGUAACUGCCCUGAAGguaguccuggcgucuuuac
......((((((.((.(((((((((.(((.(((((.(((((((.....))))))).))))).))).))))))))).))...)))))).....

Structure

gaucgu      --u  a         U   C     C       c 
      gaugcc   ac accuUCGGG CAG UACGA AUGAGCG u
      ||||||   || ||||||||| ||| ||||| ||||||| c
      cugcgg   ug ugGAAGUCC GUC AUGCU UGUUUgc c
-cauuu      ucc  a         C   A     C       u 

Annotation confidence Medium

Genome context

scaffold_108: 81030-81121 [-]

Mature nve-miR-2040a-5p

• Accession: MIMAT0009802
• Description: Nematostella vectensis nve-miR-2040a-5p mature miRNA
• Sequence: 21 - UCGGGUCAGCUACGACAUGAGCG - 43
• Evidence: experimental ; 454 [1]

Mature nve-miR-2040a-3p

• Accession: MIMAT0009803
• Description: Nematostella vectensis nve-miR-2040a-3p mature miRNA
• Sequence: 51 - UUUGUCUCGUAACUGCCCUGAAG - 73
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197