Stem-loop nve-mir-2040b

Accession

MI0010310

Description

Nematostella vectensis nve-mir-2040b precursor miRNA

Sequence

875 reads, 1009.0 reads per million, 22 experiments

agaucaugauaccuaccaccuUCAGGUCAGCUACGACACGAgcgcuccucgUUCGUCUCGUAACUGCCCUGAAGgugguccuggcgucuuua
.......(((.((.((((((((((((.(((.(((((.(((((((.....))))))).))))).))).))))))))))))...)).)))....

Structure

agaucau   a  --u            U   C     C       c 
       gau cc   accaccuUCAGG CAG UACGA ACGAgcg u
       ||| ||   |||||||||||| ||| ||||| ||||||| c
       cug gg   uggugGAAGUCC GUC AUGCU UGCUUgc c
---auuu   c  ucc            C   A     C       u 

Annotation confidence Medium

Genome context

scaffold_82: 49687-49778 [+]

Mature nve-miR-2040b-5p

• Accession: MIMAT0009808
• Description: Nematostella vectensis nve-miR-2040b-5p mature miRNA
• Sequence: 22 - UCAGGUCAGCUACGACACGA - 41
• Evidence: experimental ; 454 [1]

Mature nve-miR-2040b-3p

• Accession: MIMAT0009809
• Description: Nematostella vectensis nve-miR-2040b-3p mature miRNA
• Sequence: 52 - UUCGUCUCGUAACUGCCCUGAAG - 74
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197