Stem-loop nve-mir-2047

Accession

MI0010315

Description

Nematostella vectensis nve-mir-2047 precursor miRNA

Sequence

267 reads, 270 reads per million, 19 experiments

auccgggaguaaauucguaacugcucaaUUCGCCGAGCAGAUGUCGGAGAguucaacugUCAGACAUCUGCUCGGCGAAUUgagcaguuauuuugaccaaga
.((..((..((((...(((((((((((((((((((((((((((((.((.(((...))).)).))))))))))))))))))))))))))))))))).))..))

Structure

a  cg  ag    uuc                             G  G   u 
 uc  gg  uaaa   guaacugcucaaUUCGCCGAGCAGAUGUC GA Agu  
 ||  ||  ||||   ||||||||||||||||||||||||||||| || ||| c
 ag  cc  guuu   uauugacgagUUAAGCGGCUCGUCUACAG CU uca  
-  aa  -a    ---                             A  g   a 

Annotation confidence Medium

Genome context

scaffold_3670: 1176-1277 [+]

Mature nve-miR-2047-5p

• Accession: MIMAT0009818
• Description: Nematostella vectensis nve-miR-2047-5p mature miRNA
• Sequence: 29 - UUCGCCGAGCAGAUGUCGGAGA - 50
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2047-3p

• Accession: MIMAT0009819
• Description: Nematostella vectensis nve-miR-2047-3p mature miRNA
• Sequence: 60 - UCAGACAUCUGCUCGGCGAAUU - 81
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663