Stem-loop nve-mir-2050

Accession

MI0010318

Description

Nematostella vectensis nve-mir-2050 precursor miRNA

Sequence

512 reads, 242 reads per million, 21 experiments

gucauuucauggcgcgagaaCCCGGGUCCCAGUCAUCAAACGUcauugcacAUUUGAUUGCUGUGAUCUGGUUUuccgugucgauguauaac
.......(((((((((((((((.(((((.((((.((((((.((......)).)))))).)))).))))))))))).)))))).)))......

Structure

gucauuu   -      -      C     C    C      C  ca 
       cau ggcgcg agaaCC GGGUC CAGU AUCAAA GU  u
       ||| |||||| |||||| ||||| |||| |||||| ||   
       gua cugugc uUUUGG UCUAG GUCG UAGUUU ca  u
-caauau   g      c      -     U    U      A  cg 

Annotation confidence Low

Genome context

scaffold_13: 1048109-1048200 [+]

Mature nve-miR-2050-5p

• Accession: MIMAT0009824
• Description: Nematostella vectensis nve-miR-2050-5p mature miRNA
• Sequence: 21 - CCCGGGUCCCAGUCAUCAAACGU - 43
• Evidence: experimental ; 454 [1]

Mature nve-miR-2050-3p

• Accession: MIMAT0009825
• Description: Nematostella vectensis nve-miR-2050-3p mature miRNA
• Sequence: 52 - AUUUGAUUGCUGUGAUCUGGUUU - 74
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663