Stem-loop nve-mir-2051

Accession

MI0010320

Description

Nematostella vectensis nve-mir-2051 precursor miRNA

Sequence

121 reads, 155 reads per million, 11 experiments

auguacgggcccgccuaugaAAAUAGAAAAGCUUCCGGUUUUuugacaucgcaaUACCGGAGUCUUUUCUGUGuccauauucgugaccagaauc
......((...((..((((...(((((((((.(((((((...(((......))).))))))).)))))))))...))))..))...))......

Structure

auguac  gcc  cc    aAA         C       UUU   ac 
      gg   cg  uaug   AUAGAAAAG UUCCGGU   uug  a
      ||   ||  ||||   ||||||||| |||||||   |||   
      cc   gc  auac   UGUCUUUUC GAGGCCA   aac  u
cuaaga  agu  uu    cuG         U       --U   gc 

Annotation confidence Medium

Genome context

scaffold_231: 5180-5273 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nve-mir-2051

Mature nve-miR-2051-5p

• Accession: MIMAT0009828
• Description: Nematostella vectensis nve-miR-2051-5p mature miRNA
• Sequence: 21 - AAAUAGAAAAGCUUCCGGUUUU - 42
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2051-3p

• Accession: MIMAT0009829
• Description: Nematostella vectensis nve-miR-2051-3p mature miRNA
• Sequence: 55 - UACCGGAGUCUUUUCUGUG - 73
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663