Stem-loop cfa-mir-133c

Accession

MI0010325

Description

Canis lupus familiaris cfa-mir-133c precursor miRNA

Literature search

1 open access papers mention cfa-mir-133c
(4 sentences)

Sequence

3489521 reads, 7552.0 reads per million, 80 experiments

aaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaacuguucaauggaUUUGGUCCCCUUCAACCAGCUGUagcugugcauuga
(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))..

Structure

--     uuu    a       AA  U  A        aacug 
  aaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
  |||||   |||| |||||||  || || ||||||||      
  uuacg   cgaU UCGACCA  UU CC UGGUUUag     u
ag     ugu    G       AC  C  C        guaac 

Annotation confidence High

Genome context

24: 47360810-47360895 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-133c

Mature cfa-miR-133c-5p

• Accession: MIMAT0051886
• Description: Canis lupus familiaris cfa-miR-133c-5p mature miRNA
• Sequence: 14 - AGCUGGUAAAAUGGAACCAAAU - 35
• Evidence: not_experimental

Mature cfa-miR-133c-3p

• Accession: MIMAT0009833
• Description: Canis lupus familiaris cfa-miR-133c-3p mature miRNA
• Sequence: 51 - UUUGGUCCCCUUCAACCAGCUGU - 73
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39