Stem-loop cfa-mir-133a

Accession

MI0010326

Description

Canis lupus familiaris cfa-mir-133a precursor miRNA

Literature search

13 open access papers mention cfa-mir-133a
(32 sentences)

Sequence

3486070 reads, 7549.0 reads per million, 80 experiments

caaugcuuugcuagAGCUGGUAAAAUGGAACCAAAUcgccucuucaauggaUUUGGUCCCCUUCAACCAGCUGUagcuaugcauuga
((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).

Structure

-      uuu    g       AA  U  A        gccuc 
 caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 

Annotation confidence High

Genome context

7: 66282216-66282302 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-133a

Mature cfa-miR-133a-5p

• Accession: MIMAT0051887
• Description: Canis lupus familiaris cfa-miR-133a-5p mature miRNA
• Sequence: 15 - AGCUGGUAAAAUGGAACCAAAU - 36
• Evidence: not_experimental

Mature cfa-miR-133a-3p

• Accession: MIMAT0009834
• Description: Canis lupus familiaris cfa-miR-133a-3p mature miRNA
• Sequence: 52 - UUUGGUCCCCUUCAACCAGCUGU - 74
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39