Stem-loop cfa-mir-133b

Accession

MI0010327

Description

Canis lupus familiaris cfa-mir-133b precursor miRNA

Literature search

12 open access papers mention cfa-mir-133b
(30 sentences)

Sequence

824263 reads, 2623.0 reads per million, 81 experiments

cccugcucuggcuggucaaacggaaccaaguccgucuuccugagaggUUUGGUCCCCUUCAACCAGCUAcagcagggcuggcaa
(((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).))))))).......

Structure

-------       c        ca  c  a      u  g    c 
       cccugcu uggcuggu  aa gg accaag cc ucuu  
       ||||||| ||||||||  || || |||||| || |||| c
       gggacga AUCGACCA  UU CC UGGUUU gg agag  
aacgguc       c        AC  C  C      -  -    u 

Annotation confidence Not enough data

Genome context

12: 20308697-20308780 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-133b

Mature cfa-miR-133b-3p

• Accession: MIMAT0009835
• Description: Canis lupus familiaris cfa-miR-133b-3p mature miRNA
• Sequence: 48 - UUUGGUCCCCUUCAACCAGCUA - 69
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39