Stem-loop cfa-let-7a-2

Accession

MI0010328

Description

Canis lupus familiaris cfa-let-7a-2 precursor miRNA

Literature search

3 open access papers mention cfa-let-7a-2
(5 sentences)

Sequence

11814858 reads, 17723.0 reads per million, 82 experiments

cugcauguucccagguUGAGGUAGUAGGUUGUAUAGUUuagaauuacaucaagggagauaaCUGUACAGCCUCCUAGCUUUCCuugggucuugcac
.((((....((((((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).)))..))))))...)))).

Structure

c    uguu      uU   G   U             uagaauuac   aa 
 ugca    cccagg  GAG UAG AGGUUGUAUAGUU         auc  g
 ||||    ||||||  ||| ||| |||||||||||||         |||   
 acgu    ggguuC  UUC AUC UCCGACAUGUCaa         uag  g
c    -ucu      CU   G   C             ---------   ag 

Annotation confidence High

Genome context

5: 12002281-12002376 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-let-7a-2

Mature cfa-let-7a-5p

• Accession: MIMAT0006594
• Description: Canis lupus familiaris cfa-let-7a-5p mature miRNA
• Sequence: 17 - UGAGGUAGUAGGUUGUAUAGUU - 38
• Evidence: not_experimental

Mature cfa-let-7a-2-3p

• Accession: MIMAT0051702
• Description: Canis lupus familiaris cfa-let-7a-2-3p mature miRNA
• Sequence: 62 - CUGUACAGCCUCCUAGCUUUCC - 83
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39