Stem-loop cfa-let-7b

Accession

MI0010329

Description

Canis lupus familiaris cfa-let-7b precursor miRNA

Literature search

22 open access papers mention cfa-let-7b
(53 sentences)

Sequence

4419006 reads, 7578.0 reads per million, 82 experiments

cggggUGAGGUAGUAGGUUGUGUGGUUucagggcagugauguugcccccucggaagauaaCUAUACAACCUACUGCCUUCCccga
(((((.(((((((((((((((((((((((.((((((.....))))))(....)..)).)))))))))))))))))))))))))).

Structure

-     U                     -  -------a      u 
 cgggg GAGGUAGUAGGUUGUGUGGUU uc        gggcag g
 ||||| ||||||||||||||||||||| ||        |||||| a
 gccCC UUCCGUCAUCCAACAUAUCaa ag        cccguu u
a     -                     u  aaggcucc      g 

Annotation confidence High

Genome context

10: 20767153-20767237 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-let-7b

Mature cfa-let-7b-5p

• Accession: MIMAT0009836
• Description: Canis lupus familiaris cfa-let-7b-5p mature miRNA
• Sequence: 6 - UGAGGUAGUAGGUUGUGUGGUU - 27
• Evidence: not_experimental

Mature cfa-let-7b-3p

• Accession: MIMAT0051888
• Description: Canis lupus familiaris cfa-let-7b-3p mature miRNA
• Sequence: 61 - CUAUACAACCUACUGCCUUCC - 81
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39