Stem-loop cfa-mir-34b

Accession

MI0010332

Description

Canis lupus familiaris cfa-mir-34b precursor miRNA

Literature search

5 open access papers mention cfa-mir-34b
(12 sentences)

Sequence

35230 reads, 405.0 reads per million, 68 experiments

gugcucgguuuguAGGCAGUGUAAUUAGCUGAUUGUccucugcugcuuacAAUCACUAACUCCACUGCCAUCaaaacaaggcac
(((((..((((...(((((((...((((.(((((((...(....)...)))))))))))...)))))))....))))..)))))

Structure

     cg    -guA       UAA    C       ccu u 
gugcu  guuu    GGCAGUG   UUAG UGAUUGU   c g
|||||  ||||    |||||||   |||| |||||||   |  
cacgg  caaa    CCGUCAC   AAUC ACUAAca   g c
     aa    aCUA       CUC    -       uuc u 

Annotation confidence High

Genome context

5: 21584341-21584424 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-34b

Mature cfa-miR-34b-5p

• Accession: MIMAT0009838
• Description: Canis lupus familiaris cfa-miR-34b-5p mature miRNA
• Sequence: 14 - AGGCAGUGUAAUUAGCUGAUUGU - 36
• Evidence: not_experimental

Mature cfa-miR-34b-3p

• Accession: MIMAT0051890
• Description: Canis lupus familiaris cfa-miR-34b-3p mature miRNA
• Sequence: 51 - AAUCACUAACUCCACUGCCAUC - 72
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39