miRBase entry: cfa-mir-135a-1

Stem-loop cfa-mir-135a-1


Accession
MI0010333
Description
Canis lupus familiaris cfa-mir-135a-1 precursor miRNA


Sequence

35129 reads, 144.0 reads per million, 75 experiments
aggccucgcuguucucUAUGGCUUUUUAUUCCUAUGUGAUuuuacugcucacucAUAUAGGGAUUGGAGCCGUGGCguacggcgggg
...(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).)))))))))

Structure
agg         u u          UU            Uuuua 
   ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
   ||||||||| | ||||||||||  ||||||||||||     u
   ggggcggca g GGUGCCGAGG  UAGGGAUAUAcu     g
---         u C          -U            cacuc 


Annotation confidence High
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Genome context
20: 37811966-37812052 [+]

Database links

Mature cfa-miR-135a-5p

Accession MIMAT0010196
Description Canis lupus familiaris cfa-miR-135a-5p mature miRNA
Sequence 17 - UAUGGCUUUUUAUUCCUAUGUGAU - 40
Evidence not_experimental

Mature cfa-miR-135a-1-3p

Accession MIMAT0051739
Description Canis lupus familiaris cfa-miR-135a-1-3p mature miRNA
Sequence 55 - AUAUAGGGAUUGGAGCCGUGGC - 76
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39