Stem-loop cfa-mir-153

Accession

MI0010335

Description

Canis lupus familiaris cfa-mir-153 precursor miRNA

Literature search

3 open access papers mention cfa-mir-153
(14 sentences)

Sequence

114649 reads, 589.0 reads per million, 76 experiments

agcgguggccaguGUCAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAUCauugga
........(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).)))))).

Structure

agcggugg      -             GU       -a  aa 
        ccaguG UCAUUUUUGUGAU  UGCAGCU  gu  u
        |||||| |||||||||||||  |||||||  ||  a
        gguuaC AGUGAAAACACUG  ACGUUga  cg  u
-------a      U             AU       cc  ag 

Annotation confidence High

Genome context

16: 21664493-21664572 [-]

Mature cfa-miR-153-5p

• Accession: MIMAT0051892
• Description: Canis lupus familiaris cfa-miR-153-5p mature miRNA
• Sequence: 14 - GUCAUUUUUGUGAUGUUGCAGCU - 36
• Evidence: not_experimental

Mature cfa-miR-153-3p

• Accession: MIMAT0009840
• Description: Canis lupus familiaris cfa-miR-153-3p mature miRNA
• Sequence: 53 - UUGCAUAGUCACAAAAGUGAUC - 74
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39