Stem-loop cfa-mir-182

Accession

MI0010336

Description

Canis lupus familiaris cfa-mir-182 precursor miRNA

Literature search

11 open access papers mention cfa-mir-182
(16 sentences)

Sequence

644139 reads, 1606.0 reads per million, 82 experiments

gcuugccucccgccguuUUUGGCAAUGGUAGAACUCACACUggugagguaaugggaucCGGUGGUUCUAGACUUGCCAACUauggugcgagg
.....((((.((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))).))))

Structure

gcuug    c      uU       UGG      UCA      ugaggu 
     ccuc cgccgu  UUGGCAA   UAGAAC   CACUgg      a
     |||| ||||||  |||||||   ||||||   ||||||       
     ggag guggua  AACCGUU   AUCUUG   GUGGCc      a
-----    c      UC       CAG      ---      uagggu 

Annotation confidence High

Genome context

14: 6835704-6835795 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-182

Mature cfa-miR-182-5p

• Accession: MIMAT0009841
• Description: Canis lupus familiaris cfa-miR-182-5p mature miRNA
• Sequence: 18 - UUUGGCAAUGGUAGAACUCACACU - 41
• Evidence: not_experimental

Mature cfa-miR-182-3p

• Accession: MIMAT0051893
• Description: Canis lupus familiaris cfa-miR-182-3p mature miRNA
• Sequence: 59 - CGGUGGUUCUAGACUUGCCAACU - 81
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39