Stem-loop cfa-mir-214

Accession

MI0010342

Description

Canis lupus familiaris cfa-mir-214 precursor miRNA

Literature search

11 open access papers mention cfa-mir-214
(21 sentences)

Sequence

188396 reads, 292.0 reads per million, 79 experiments

ggccuggcuggacggaguugucaugugucUGCCUGUCUACACUUGCUGUGCAGAacauccgcucaccuguACAGCAGGCACAGACAGGCAGUcacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure

ggccu      acgga           u          ACA            Aacau 
     ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCAG     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           U          CAC            cacuc 

Annotation confidence High

Genome context

7: 26569331-26569440 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-214

Mature cfa-miR-214-5p

• Accession: MIMAT0051899
• Description: Canis lupus familiaris cfa-miR-214-5p mature miRNA
• Sequence: 30 - UGCCUGUCUACACUUGCUGUGCAGA - 54
• Evidence: not_experimental

Mature cfa-miR-214-3p

• Accession: MIMAT0009847
• Description: Canis lupus familiaris cfa-miR-214-3p mature miRNA
• Sequence: 71 - ACAGCAGGCACAGACAGGCAGU - 92
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39