Stem-loop cfa-mir-215

Accession

MI0010343

Description

Canis lupus familiaris cfa-mir-215 precursor miRNA

Literature search

2 open access papers mention cfa-mir-215
(2 sentences)

Sequence

13229 reads, 24.0 reads per million, 76 experiments

uguacaggaaaAUGACCUACGAAUUGAUAGACAauuuggcuaaguuugUCUGUCAUUUUUGUAGGCCAAUAuucuguau
.((((((((...((.((((((((.((((((((((.((.....)).))))))))))..)))))))).))...))))))))

Structure

u        aaA  A        -U          u  g 
 guacagga   UG CCUACGAA  UGAUAGACAa uu g
 ||||||||   || ||||||||  |||||||||| || c
 uaugucuu   AC GGAUGUUU  ACUGUCUguu ga u
-        AUA  C        UU          u  a 

Annotation confidence High

Genome context

38: 14930588-14930666 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-215

Mature cfa-miR-215-5p

• Accession: MIMAT0009848
• Description: Canis lupus familiaris cfa-miR-215-5p mature miRNA
• Sequence: 12 - AUGACCUACGAAUUGAUAGACA - 33
• Evidence: not_experimental

Mature cfa-miR-215-3p

• Accession: MIMAT0051900
• Description: Canis lupus familiaris cfa-miR-215-3p mature miRNA
• Sequence: 49 - UCUGUCAUUUUUGUAGGCCAAUA - 71
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39