Stem-loop cfa-mir-216a

Accession

MI0010344

Description

Canis lupus familiaris cfa-mir-216a precursor miRNA

Literature search

3 open access papers mention cfa-mir-216a
(5 sentences)

Sequence

19660 reads, 13.0 reads per million, 46 experiments

gauggcugugaguuggcuUAAUCUCAGCUGGCAACUGUGAGAUguucauacaauccccCACAGUGGUCUCUGGGAUUAUGcuaaacagagcaauauccuugcccu
(((((((.((..(((((.(((((((((..(((.((((((.(((((....)).)))...)))))).))).))))))))).))))).)).)))..))))........

Structure

--------    --   g  ag     u         CU   A      --A   -  u 
        gaug  gcu ug  uuggc UAAUCUCAG  GGC ACUGUG   GAU gu c
        ||||  ||| ||  ||||| |||||||||  ||| ||||||   ||| ||  
        cuau  cga ac  aaucG AUUAGGGUC  CUG UGACAC   cua ca a
ucccguuc    aa   g  -a     U         -U   G      ccc   a  u 

Annotation confidence High

Genome context

10: 57766339-57766443 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-216a

Mature cfa-miR-216a-5p

• Accession: MIMAT0009849
• Description: Canis lupus familiaris cfa-miR-216a-5p mature miRNA
• Sequence: 19 - UAAUCUCAGCUGGCAACUGUGAGAU - 43
• Evidence: not_experimental

Mature cfa-miR-216a-3p

• Accession: MIMAT0051901
• Description: Canis lupus familiaris cfa-miR-216a-3p mature miRNA
• Sequence: 59 - CACAGUGGUCUCUGGGAUUAUG - 80
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39