Stem-loop cfa-mir-217

Accession

MI0010345

Description

Canis lupus familiaris cfa-mir-217 precursor miRNA

Literature search

8 open access papers mention cfa-mir-217
(17 sentences)

Sequence

35305 reads, 22.0 reads per million, 47 experiments

uugaugucgcagaUACUGCAUCAGGAACUGAUUGGAuaagaaugggucacCAUCAGUUCCUAAUGCAUUGCCUucagcaucu
..(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).))))).

Structure

uu     c c  a  C     C          U -   aag 
  gaugu g ag UA UGCAU AGGAACUGAU G GAu   a
  ||||| | || || ||||| |||||||||| | |||    
  cuacg c UC GU ACGUA UCCUUGACUA c cug   a
-u     a u  C  U     A          C a   ggu 

Annotation confidence High

Genome context

10: 57759472-57759553 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-217

Mature cfa-miR-217-5p

• Accession: MIMAT0009850
• Description: Canis lupus familiaris cfa-miR-217-5p mature miRNA
• Sequence: 14 - UACUGCAUCAGGAACUGAUUGGA - 36
• Evidence: not_experimental

Mature cfa-miR-217-3p

• Accession: MIMAT0051902
• Description: Canis lupus familiaris cfa-miR-217-3p mature miRNA
• Sequence: 51 - CAUCAGUUCCUAAUGCAUUGCCU - 73
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39