Stem-loop cfa-mir-222

Accession

MI0010346

Description

Canis lupus familiaris cfa-mir-222 precursor miRNA

Literature search

10 open access papers mention cfa-mir-222
(15 sentences)

Sequence

579681 reads, 1123.0 reads per million, 82 experiments

cccucaauggCUCAGUAGCCAGUGUAGAUCCugucuuuuguaaucaguAGCUACAUCUGGCUACUGGGUCUcugauggcaucuucuagcu
((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).))............

Structure

------------  c   au              -     AUC   ucuu 
            cc uca  ggCUCAGUAGCCAG UGUAG   Cug    u
            || |||  |||||||||||||| |||||   |||    u
            gg agu  CUGGGUCAUCGGUC ACAUC   gac    g
ucgaucuucuac  u   cU              U     GAu   uaau 

Annotation confidence High

Genome context

X: 39656443-39656532 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-222

Mature cfa-miR-222-5p

• Accession: MIMAT0051903
• Description: Canis lupus familiaris cfa-miR-222-5p mature miRNA
• Sequence: 11 - CUCAGUAGCCAGUGUAGAUCC - 31
• Evidence: not_experimental

Mature cfa-miR-222-3p

• Accession: MIMAT0009851
• Description: Canis lupus familiaris cfa-miR-222-3p mature miRNA
• Sequence: 49 - AGCUACAUCUGGCUACUGGGUCU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39