Stem-loop cfa-mir-223

Accession

MI0010347

Description

Canis lupus familiaris cfa-mir-223 precursor miRNA

Literature search

19 open access papers mention cfa-mir-223
(52 sentences)

Sequence

48081 reads, 73.0 reads per million, 73 experiments

ccuggccuccugcagugccacacucCGUGUAUUUGACAAGCUGAGUUAgacacuccauguggaagagUGUCAGUUUGUCAAAUACCCCAAgugcggcacaugc
...........((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).)))

Structure

ccuggccuccu   -     a    cC U              GAGUUA       cau 
           gca gugcc cacu  G GUAUUUGACAAGCU      gacacuc   g
           ||| ||||| ||||  | ||||||||||||||      |||||||   u
           cgu cacgg gugA  C CAUAAACUGUUUGA      CUGUgag   g
-----------   a     c    AC C              ------       aag 

Annotation confidence High

Genome context

X: 51802379-51802481 [+]

Mature cfa-miR-223-5p

• Accession: MIMAT0051904
• Description: Canis lupus familiaris cfa-miR-223-5p mature miRNA
• Sequence: 26 - CGUGUAUUUGACAAGCUGAGUUA - 48
• Evidence: not_experimental

Mature cfa-miR-223-3p

• Accession: MIMAT0009852
• Description: Canis lupus familiaris cfa-miR-223-3p mature miRNA
• Sequence: 68 - UGUCAGUUUGUCAAAUACCCCAA - 90
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39