miRBase entry: cfa-mir-301b

Stem-loop cfa-mir-301b


Accession
MI0010349
Description
Canis lupus familiaris cfa-mir-301b precursor miRNA


Sequence

5378 reads, 16.0 reads per million, 77 experiments
cccagguGCUCUGACGAGGUUGCACUACUgugcucugagaagCAGUGCAAUGAUAUUGUCAAAGCaucggggacca
(((.((((((.((((((.((((((((.((...........)).))))))))....)))))).)))))).)))....

Structure
----   a      C      ---G        A  gugc 
    ccc gguGCU UGACGA    GUUGCACU CU    u
    ||| |||||| ||||||    |||||||| ||    c
    ggg cuaCGA ACUGUU    UAACGUGA ga    u
acca   g      A      AUAG        C  agag 


Annotation confidence High
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Genome context
26: 32329837-32329912 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-301b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-301b-5p

Accession MIMAT0051906
Description Canis lupus familiaris cfa-miR-301b-5p mature miRNA
Sequence 8 - GCUCUGACGAGGUUGCACUACU - 29
Evidence not_experimental

Mature cfa-miR-301b-3p

Accession MIMAT0009854
Description Canis lupus familiaris cfa-miR-301b-3p mature miRNA
Sequence 43 - CAGUGCAAUGAUAUUGUCAAAGC - 65
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39