Stem-loop cfa-mir-145

Accession

MI0010359

Description

Canis lupus familiaris cfa-mir-145 precursor miRNA

Literature search

27 open access papers mention cfa-mir-145
(38 sentences)

Sequence

1034002 reads, 3080.0 reads per million, 82 experiments

uguccucacgGUCCAGUUUUCCCAGGAAUCCCuuagaugcuaagaugGGGAUUCCUGGAAAUACUGUUCUUgaggucaugguu
((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).....

Structure

-----  u     c  UC    U  C            uagau 
     ug ccuca gG  CAGU UU CCAGGAAUCCCu     g
     || ||||| ||  |||| || ||||||||||||     c
     ac ggagU UC  GUCA AA GGUCCUUAGGGg     u
uuggu  u     -  UU    U  A            uagaa 

Annotation confidence High

Genome context

4: 60015687-60015769 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-145

Mature cfa-miR-145-5p

• Accession: MIMAT0009863
• Description: Canis lupus familiaris cfa-miR-145-5p mature miRNA
• Sequence: 11 - GUCCAGUUUUCCCAGGAAUCCC - 32
• Evidence: not_experimental

Mature cfa-miR-145-3p

• Accession: MIMAT0051909
• Description: Canis lupus familiaris cfa-miR-145-3p mature miRNA
• Sequence: 48 - GGGAUUCCUGGAAAUACUGUUCUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39