miRBase entry: cfa-mir-196a-1

Stem-loop cfa-mir-196a-1


Accession
MI0010360
Description
Canis lupus familiaris cfa-mir-196a-1 precursor miRNA


Sequence

97434 reads, 145.0 reads per million, 60 experiments
acugcugagugaauUAGGUAGUUUCAUGUUGUUGGGccuggauuucugaacaCAACAACAUUAAACCACCCGAcucacggcaguuacugcu
((((((..((((.((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)).)))))))))).......

Structure
-------      ga    a  A   A    C         - Gc ugg 
       acugcu  guga uU GGU GUUU AUGUUGUUG G  c   a
       ||||||  |||| || ||| |||| ||||||||| |  |   u
       ugacgg  cacu AG CCA CAAA UACAACAAC c  g   u
ucgucau      --    c  C   C    U         a aa ucu 


Annotation confidence Not enough data
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Genome context
9: 25690134-25690224 [-]

Database links

Mature cfa-miR-196a-5p

Accession MIMAT0006662
Description Canis lupus familiaris cfa-miR-196a-5p mature miRNA
Sequence 15 - UAGGUAGUUUCAUGUUGUUGGG - 36
Evidence not_experimental

Mature cfa-miR-196a-1-3p

Accession MIMAT0051779
Description Canis lupus familiaris cfa-miR-196a-1-3p mature miRNA
Sequence 53 - CAACAACAUUAAACCACCCGA - 73
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39