Stem-loop cfa-mir-490

Accession

MI0010372

Description

Canis lupus familiaris cfa-mir-490 precursor miRNA

Literature search

3 open access papers mention cfa-mir-490
(3 sentences)

Sequence

20768 reads, 56.0 reads per million, 71 experiments

aaaguucauuguucgacaCCAUGGAUCUCCAGGUGGGUcacguuuagagauacacCAACCUGGAGGACUCCAUGCUGUUGa
............((((((.(((((((((((((((.(((...((........))))).)))))))))..)))))).))))))

Structure

aaaguucauugu      C      --         G   cac  uua 
            ucgaca CAUGGA  UCUCCAGGU GGU   gu   g
            |||||| ||||||  ||||||||| |||   ||    
            aGUUGU GUACCU  GGAGGUCCA Cca   ca   a
------------      C      CA         A   ---  uag 

Annotation confidence High

Genome context

16: 11595700-11595780 [-]

Mature cfa-miR-490-5p

• Accession: MIMAT0051917
• Description: Canis lupus familiaris cfa-miR-490-5p mature miRNA
• Sequence: 19 - CCAUGGAUCUCCAGGUGGGU - 38
• Evidence: not_experimental

Mature cfa-miR-490-3p

• Accession: MIMAT0009875
• Description: Canis lupus familiaris cfa-miR-490-3p mature miRNA
• Sequence: 56 - CAACCUGGAGGACUCCAUGCUGUUG - 80
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39