Stem-loop cfa-mir-105a

Accession

MI0010377

Description

Canis lupus familiaris cfa-mir-105a precursor miRNA

Literature search

1 open access papers mention cfa-mir-105a
(1 sentences)

Sequence

38943 reads, 86.0 reads per million, 75 experiments

ugugcaucguagUCAAAUGCUCAGACUCCUGUGGUggcugcucaugcaCCACGGAUGUUUGAGCAUGUGCUacggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure

ugu         U  A          UC        gcug 
   gcaucguag CA AUGCUCAGAC  CUGUGGUg    c
   ||||||||| || ||||||||||  ||||||||     
   uguggcaUC GU UACGAGUUUG  GGCACCac    u
auc         -  G          UA        guac 

Annotation confidence High

Genome context

X: 122625394-122625474 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-105a

Mature cfa-miR-105a-5p

• Accession: MIMAT0009879
• Description: Canis lupus familiaris cfa-miR-105a-5p mature miRNA
• Sequence: 13 - UCAAAUGCUCAGACUCCUGUGGU - 35
• Evidence: not_experimental

Mature cfa-miR-105a-3p

• Accession: MIMAT0051920
• Description: Canis lupus familiaris cfa-miR-105a-3p mature miRNA
• Sequence: 49 - CCACGGAUGUUUGAGCAUGUGCU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39