Stem-loop cfa-mir-188

Accession

MI0010379

Description

Canis lupus familiaris cfa-mir-188 precursor miRNA

Literature search

5 open access papers mention cfa-mir-188
(8 sentences)

Sequence

6645 reads, 17.0 reads per million, 76 experiments

ugcucccucucucaCAUCCCUUGCAUGGUGGAGGGUgagcuuuuugaaaaCCCCUCCCACAUGCAGGGUUUGCAggauggugagcc
.((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).)))).

Structure

u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  GU  GGGACGUAC  CCUCCC     g u
c    u  -u   AC  UU         AC      Caaaa u 

Annotation confidence High

Genome context

X: 42915886-42915971 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-188

Mature cfa-miR-188-5p

• Accession: MIMAT0009880
• Description: Canis lupus familiaris cfa-miR-188-5p mature miRNA
• Sequence: 15 - CAUCCCUUGCAUGGUGGAGGGU - 36
• Evidence: not_experimental

Mature cfa-miR-188-3p

• Accession: MIMAT0051922
• Description: Canis lupus familiaris cfa-miR-188-3p mature miRNA
• Sequence: 51 - CCCCUCCCACAUGCAGGGUUUGCA - 74
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39