Stem-loop cfa-mir-134

Accession

MI0010382

Description

Canis lupus familiaris cfa-mir-134 precursor miRNA

Literature search

7 open access papers mention cfa-mir-134
(10 sentences)

Sequence

8043 reads, 58.0 reads per million, 75 experiments

cagggugUGUGACUGGUUGACCAGAGGGGcaagcacucuguucaccCUGUGGGCCACCUAGUCACCAacccuc
.(((((..((((((((.((.(((.((((...((((...))))..)))).)))..)).))))))))..))))).

Structure

c     gU        U  -A   G    Gca    c 
 agggu  GUGACUGG UG  CCA AGGG   agca  
 |||||  |||||||| ||  ||| ||||   |||| u
 uccca  CACUGAUC AC  GGU UCcc   uugu  
c     AC        C  CG   G    -ac    c 

Annotation confidence High

Genome context

8: 69565142-69565214 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from cfa-mir-134

Mature cfa-miR-134-5p

• Accession: MIMAT0009883
• Description: Canis lupus familiaris cfa-miR-134-5p mature miRNA
• Sequence: 8 - UGUGACUGGUUGACCAGAGGGG - 29
• Evidence: not_experimental

Mature cfa-miR-134-3p

• Accession: MIMAT0051923
• Description: Canis lupus familiaris cfa-miR-134-3p mature miRNA
• Sequence: 47 - CUGUGGGCCACCUAGUCACCA - 67
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39