Stem-loop cfa-mir-149

Accession

MI0010383

Description

Canis lupus familiaris cfa-mir-149 precursor miRNA

Literature search

3 open access papers mention cfa-mir-149
(5 sentences)

Sequence

115594 reads, 302.0 reads per million, 82 experiments

gccggcgcccgggcUCUGGCUCCGUGUCUUCACUCCCguguguccgaggaggGAGGGAGGGACGGGGGCUGUGCUGGggcagc
....((((((.(((.(.(.((((((.(((((.(((((.(.(.....).).)))))))))).)))))).).).))).)))).))

Structure

gccg  -    g   U U G      G     A     g g g 
    gc gccc ggc C G CUCCGU UCUUC CUCCC u u u
    || |||| ||| | | |||||| ||||| ||||| | | c
    cg cggG UCG G C GGGGCA GGAGG GAGgg g a c
----  a    G   U U G      G     -     a g g 

Annotation confidence Medium

Genome context

25: 50934599-50934681 [+]

Mature cfa-miR-149-5p

• Accession: MIMAT0009884
• Description: Canis lupus familiaris cfa-miR-149-5p mature miRNA
• Sequence: 15 - UCUGGCUCCGUGUCUUCACUCCC - 37
• Evidence: not_experimental

Mature cfa-miR-149-3p

• Accession: MIMAT0051924
• Description: Canis lupus familiaris cfa-miR-149-3p mature miRNA
• Sequence: 53 - GAGGGAGGGACGGGGGCUGUGCUGG - 77
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39