Stem-loop cfa-mir-377

Accession

MI0010389

Description

Canis lupus familiaris cfa-mir-377 precursor miRNA

Literature search

5 open access papers mention cfa-mir-377
(6 sentences)

Sequence

3449 reads, 61.0 reads per million, 54 experiments

uugagcAGAGGUUGCCCUUGGUGAAUUCgcuuuauuuauguUGAAUCACACAAAGGCAACUUUUGUuug
..((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).

Structure

uu              C   -    A    - uuu 
  gagcAGAGGUUGCC UUG GUGA UUCg c   a
  |||||||||||||| ||| |||| |||| |   u
  uuUGUUUUCAACGG AAC CACU AAGU g   u
-g              A   A    -    u uau 

Annotation confidence High

Genome context

8: 69572589-69572657 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from cfa-mir-377

Mature cfa-miR-377-5p

• Accession: MIMAT0009890
• Description: Canis lupus familiaris cfa-miR-377-5p mature miRNA
• Sequence: 7 - AGAGGUUGCCCUUGGUGAAUUC - 28
• Evidence: not_experimental

Mature cfa-miR-377-3p

• Accession: MIMAT0051930
• Description: Canis lupus familiaris cfa-miR-377-3p mature miRNA
• Sequence: 42 - UGAAUCACACAAAGGCAACUUUUGU - 66
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39