Stem-loop cfa-mir-381

Accession

MI0010390

Description

Canis lupus familiaris cfa-mir-381 precursor miRNA

Literature search

3 open access papers mention cfa-mir-381
(3 sentences)

Sequence

478513 reads, 868.0 reads per million, 82 experiments

uacuuaaAGCGAGGUUGCCCUUUGUAUAUUcgguuuauugacauagaaUAUACAAGGGCAAGCUCUCUGUgagua
((((((.((.(((.((((((((.((((((((.(((....)))...)))))))))))))))).))).)).))))))

Structure

      a  C   G        U        --g   u 
uacuua AG GAG UUGCCCUU GUAUAUUc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        aua   u 

Annotation confidence High

Genome context

8: 69556631-69556705 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from cfa-mir-381

Mature cfa-miR-381-5p

• Accession: MIMAT0051931
• Description: Canis lupus familiaris cfa-miR-381-5p mature miRNA
• Sequence: 8 - AGCGAGGUUGCCCUUUGUAUAUU - 30
• Evidence: not_experimental

Mature cfa-miR-381-3p

• Accession: MIMAT0009891
• Description: Canis lupus familiaris cfa-miR-381-3p mature miRNA
• Sequence: 49 - UAUACAAGGGCAAGCUCUCUGU - 70
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39