Stem-loop cfa-mir-340

Accession

MI0010391

Description

Canis lupus familiaris cfa-mir-340 precursor miRNA

Literature search

3 open access papers mention cfa-mir-340
(5 sentences)

Sequence

1439250 reads, 1882.0 reads per million, 82 experiments

uuguaccugaugcgaUUAUAAAGCAAUGAGACUGAUUgucaugugucgguugugggaUCCGUCUCAGUUACUUUAUAGCCgugccugguacc
..(((((.(.((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))).).))))).

Structure

uu     u a    a        -CAA      U    g     ug 
  guacc g ugcg UUAUAAAG    UGAGAC GAUU ucaug  u
  ||||| | |||| ||||||||    |||||| |||| |||||  c
  caugg c gugC GAUAUUUC    ACUCUG CUag ggugu  g
-c     u c    C        AUUG      C    -     ug 

Annotation confidence High

Genome context

11: 1676684-1676775 [+]

Mature cfa-miR-340-5p

• Accession: MIMAT0009892
• Description: Canis lupus familiaris cfa-miR-340-5p mature miRNA
• Sequence: 16 - UUAUAAAGCAAUGAGACUGAUU - 37
• Evidence: not_experimental

Mature cfa-miR-340-3p

• Accession: MIMAT0051932
• Description: Canis lupus familiaris cfa-miR-340-3p mature miRNA
• Sequence: 58 - UCCGUCUCAGUUACUUUAUAGCC - 80
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39