Stem-loop cfa-mir-330

Accession

MI0010392

Description

Canis lupus familiaris cfa-mir-330 precursor miRNA

Literature search

2 open access papers mention cfa-mir-330
(2 sentences)

Sequence

141329 reads, 232.0 reads per million, 81 experiments

cuuuggcgaucacugccUCUCUGGGCCUGUGUCUUAGGCUcugcaagaucaaccgagCAAAGCACACGGCCUGCAGAGAGgcagcgcuc
....((((....(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))))))).

Structure

cuuu    auca           --    -    U   AG    ugcaa 
    ggcg    cugccUCUCUG  GGCC UGUG CUU  GCUc     g
    ||||    |||||||||||  |||| |||| |||  ||||     a
    ucgc    gacgGAGAGAC  CCGG ACAC GAA  Cgag     u
---c    ----           GU    C    -   -A    ccaac 

Annotation confidence High

Genome context

1: 110455335-110455423 [+]

Mature cfa-miR-330-5p

• Accession: MIMAT0009893
• Description: Canis lupus familiaris cfa-miR-330-5p mature miRNA
• Sequence: 18 - UCUCUGGGCCUGUGUCUUAGGCU - 40
• Evidence: not_experimental

Mature cfa-miR-330-3p

• Accession: MIMAT0051933
• Description: Canis lupus familiaris cfa-miR-330-3p mature miRNA
• Sequence: 58 - CAAAGCACACGGCCUGCAGAGAG - 80
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39