Stem-loop cfa-mir-331

Accession

MI0010394

Description

Canis lupus familiaris cfa-mir-331 precursor miRNA

Literature search

4 open access papers mention cfa-mir-331
(4 sentences)

Sequence

171608 reads, 595.0 reads per million, 82 experiments

gaguuugguuuuguuuggguuuguUCUAGGUAUGGUCCCAGGGAUCccagaucaaaccagGCCCCUGGGCCUAUCCUAGAAccaaccuaa
..............(((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).)))))))

Structure

gaguuugguuuugu       u        U    U       AUC  agau 
              uuggguu guUCUAGG AUGG CCCAGGG   cc    c
              ||||||| |||||||| |||| |||||||   ||    a
              aauccaa cAAGAUCC UAUC GGGUCCC   Gg    a
--------------       c        -    C       --C  acca 

Annotation confidence High

Genome context

15: 35899335-35899424 [+]

Mature cfa-miR-331-5p

• Accession: MIMAT0051935
• Description: Canis lupus familiaris cfa-miR-331-5p mature miRNA
• Sequence: 25 - UCUAGGUAUGGUCCCAGGGAUC - 46
• Evidence: not_experimental

Mature cfa-miR-331-3p

• Accession: MIMAT0009895
• Description: Canis lupus familiaris cfa-miR-331-3p mature miRNA
• Sequence: 61 - GCCCCUGGGCCUAUCCUAGAA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39